Transcript: lnc-CCL1-12:6

Basic information

LNCipedia transcript ID: lnc-CCL1-12:6 
LNCipedia gene ID: lnc-CCL1-12
Ensembl Gene ID: ENSG00000279668
Ensembl Transcript ID: ENST00000584758
Location (hg38): chr17:33935444-33984374
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1567 bp
Exons: 2
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584758.2
Alternative gene names: ENSG00000279668.2; CTC-304I17.6; AC024610.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -94.4174 non-coding 
CPAT coding probability 11.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL1-12:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCL1-3:7
5.0 lnc-CCL1-3:7
5.1 lnc-SLC6A4-147:6
5.2 lnc-CCL1-12:6