Transcript: lnc-CCL1-12:8

Basic information

LNCipedia transcript ID: lnc-CCL1-12:8 
LNCipedia gene ID: lnc-CCL1-12
Location (hg38): chr17:33931132-33936206
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 535 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000584758.1; RP11-17M24.1-001; OTTHUMT00000447565.1; NONHSAT052994
Alternative gene names: ENSG00000265356.1; RP11-17M24.1; OTTHUMG00000179669.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.9801 non-coding 
CPAT coding probability 4.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL1-12:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCL1-3:1
4.0 lnc-CCL1-3:1
4.1 lnc-CCL1-3:1
5.0 lnc-CCL1-3:1
5.1 lnc-SLC6A4-147:8
5.2 lnc-CCL1-12:8