Transcript: lnc-CCL1-3:11

Basic information

LNCipedia transcript ID: lnc-CCL1-3:11 
LNCipedia gene ID: lnc-CCL1-3
Ensembl Gene ID: ENSG00000197322
Ensembl Transcript ID: ENST00000623254
Location (hg38): chr17:34574123-34579369
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3997 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623254.1
Alternative gene names: ENSG00000197322.3; C17orf102


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -79.8974 non-coding 
CPAT coding probability 59.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCL1-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C17orf102-3:1
4.1 lnc-C17orf102-3:1
5.0 lnc-C17orf102-3:1
5.1 lnc-SRCIN1-113:1
5.2 lnc-CCL1-3:11