Transcript: lnc-CCL18-1:1

Basic information

LNCipedia transcript ID: lnc-CCL18-1:1 
LNCipedia gene ID: lnc-CCL18-1
Ensembl Gene ID: ENSG00000277089
Ensembl Transcript ID: ENST00000615750
Location (hg38): chr17:36081634-36089862
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 393 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441575.1; AC069363.1-001; OTTHUMT00000256093.1; NONHSAT053172; ENST00000615750.1
Alternative gene names: ENSG00000224298.1; AC069363.1; OTTHUMG00000132736.1; ENSG00000224298.2; ENSG00000277089.4; AC243829.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -733.7565 non-coding 
CPAT coding probability 7.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL18-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCL18-1:1
4.0 lnc-CCL18-1:1
4.1 lnc-CCL18-1:1
5.0 lnc-CCL18-1:1
5.1 lnc-RPL19-66:4
5.2 lnc-CCL18-1:1