Transcript: lnc-CCL18-1:2

Basic information

LNCipedia transcript ID: lnc-CCL18-1:2 
LNCipedia gene ID: lnc-CCL18-1
Ensembl Gene ID: ENSG00000277089
Ensembl Transcript ID: ENST00000620056
Location (hg38): chr17:36072866-36089857
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 701 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053170; ENST00000590992.1; ENST00000620056.4
Alternative gene names: ENSG00000224298.2; AC069363.1; ENSG00000277089.4; AC243829.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.9153 non-coding 
CPAT coding probability 2.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL18-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCL18-1:2
4.0 lnc-CCL18-1:2
4.1 lnc-CCL18-1:2
5.0 lnc-CCL18-1:2
5.1 lnc-RPL19-66:1
5.2 lnc-CCL18-1:2