Transcript: lnc-CCL2-1:1

Basic information

LNCipedia transcript ID: lnc-CCL2-1:1 
LNCipedia gene ID: lnc-CCL2-1
Ensembl Gene ID: ENSG00000264990
Ensembl Transcript ID: ENST00000579438
Location (hg38): chr17:34176538-34178166
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1629 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579438.1; RP11-215E13.2-001; OTTHUMT00000447577.1; NONHSAT053014
Alternative gene names: ENSG00000264990.1; RP11-215E13.2; OTTHUMG00000179677.1; AC005549.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.8327 non-coding 
CPAT coding probability 10.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCL2-1:1
4.0 lnc-CCL2-1:1
4.1 lnc-CCL2-1:1
5.0 lnc-CCL2-1:1
5.1 lnc-NSRP1-103:1
5.2 lnc-CCL2-1:1