Transcript: lnc-CCL2-2:1

Basic information

LNCipedia transcript ID: lnc-CCL2-2:1 
LNCipedia gene ID: lnc-CCL2-2
Location (hg38): chr17:34161624-34164156
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 821 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025352; NONHSAT053007
Alternative gene names: XLOC_012173; linc-CCL2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.6521 non-coding 
CPAT coding probability 3.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCL2-1:1
3.1 lnc-CCL2-2:1
4.0 lnc-CCL2-2:1
4.1 lnc-CCL2-2:1
5.0 lnc-CCL2-2:1
5.1 lnc-NSRP1-102:4
5.2 lnc-CCL2-2:1