Transcript: lnc-CCL2-2:4

Basic information

LNCipedia transcript ID: lnc-CCL2-2:4 
LNCipedia gene ID: lnc-CCL2-2
Location (hg38): chr17:34159059-34165435
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1229 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT053006; FPKM1_group_12611_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.9626 non-coding 
CPAT coding probability 1.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL2-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCL2-2:4
4.0 lnc-CCL2-2:4
4.1 lnc-CCL2-2:4
5.0 lnc-CCL2-2:4
5.1 lnc-NSRP1-102:3
5.2 lnc-CCL2-2:4