Transcript: lnc-CCL2-3:1

Basic information

LNCipedia transcript ID: lnc-CCL2-3:1 
LNCipedia gene ID: lnc-CCL2-3
Ensembl Gene ID: ENSG00000264791
Ensembl Transcript ID: ENST00000577709
Location (hg38): chr17:34142947-34147047
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 375 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000577709.1; CTC-304I17.2-001; OTTHUMT00000447571.1; NONHSAT053003
Alternative gene names: ENSG00000264791.1; CTC-304I17.2; OTTHUMG00000179675.1; AC004147.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.7825 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCL2-3:1
4.0 lnc-CCL2-3:1
4.1 lnc-CCL2-3:1
5.0 lnc-CCL2-3:1
5.1 lnc-NSRP1-101:2
5.2 lnc-CCL2-3:1