Transcript: lnc-CCL2-4:1

Basic information

LNCipedia transcript ID: lnc-CCL2-4:1 
LNCipedia gene ID: lnc-CCL2-4
Ensembl Gene ID: ENSG00000263435
Ensembl Transcript ID: ENST00000582685
Location (hg38): chr17:33976531-33980851
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 323 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582685.1; RP11-17M24.2-001; OTTHUMT00000447566.1; NONHSAT052995
Alternative gene names: ENSG00000263435.1; RP11-17M24.2; OTTHUMG00000179670.1; AC024610.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.7474 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCL2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCL2-4:1
4.0 lnc-CCL2-4:1
4.1 lnc-CCL2-4:1
5.0 lnc-CCL2-4:1
5.1 lnc-NSRP1-98:1
5.2 lnc-CCL2-4:1