Transcript: lnc-CCM2-1:2

Basic information

LNCipedia transcript ID: lnc-CCM2-1:2 
LNCipedia gene ID: lnc-CCM2-1
Location (hg38): chr7:44988542-44995459
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5062 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT120425; FPKM1_group_29623_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.35 non-coding 
CPAT coding probability 3.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCM2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCM2-1:2
4.0 lnc-CCM2-1:2
4.1 lnc-CCM2-1:2
5.0 lnc-CCM2-1:2
5.1 lnc-CCT6A-127:3
5.2 lnc-CCM2-1:2