Transcript: lnc-CCND2-2:3

Basic information

LNCipedia transcript ID: lnc-CCND2-2:3 
LNCipedia gene ID: lnc-CCND2-2
Location (hg38): chr12:4019114-4026890
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1954 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT025939; FPKM1_group_5657_transcript_3
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.8127 non-coding 
CPAT coding probability 7.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCND2-2:3 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCND2-2:3
4.0 lnc-CCND2-2:3
4.1 lnc-CCND2-2:3
5.0 lnc-CCND2-2:3
5.1 lnc-CLEC4D-109:1
5.2 lnc-CCND2-2:3