Transcript: lnc-CCNJ-1:6

Basic information

LNCipedia transcript ID: lnc-CCNJ-1:6 
LNCipedia gene ID: lnc-CCNJ-1
Location (hg38): chr10:96130056-96151566
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 485 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000539666; ENST00000539666.1; ZNF518A-005; OTTHUMT00000398264.1; NONHSAT015799
Alternative gene names: ENSG00000177853; ZNF518A; ENSG00000177853.10; OTTHUMG00000018828.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.4465 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCNJ-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCNJ-1:5
3.1 lnc-CCNJ-1:6
4.0 lnc-CCNJ-1:6
4.1 lnc-CCNJ-1:6
5.0 lnc-CCNJ-1:6
5.1 lnc-SMC3-205:10
5.2 lnc-CCNJ-1:6