Transcript: lnc-CCNJ-1:8

Basic information

LNCipedia transcript ID: lnc-CCNJ-1:8 
LNCipedia gene ID: lnc-CCNJ-1
Location (hg38): chr10:96130679-96132909
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 468 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000484770; ENST00000484770.1; ZNF518A-004; OTTHUMT00000049603.1; NONHSAT015801
Alternative gene names: ENSG00000177853; ZNF518A; ENSG00000177853.10; OTTHUMG00000018828.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -115.5255 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCNJ-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCNJ-1:6
3.1 lnc-CCNJ-1:8
4.0 lnc-CCNJ-1:8
4.1 lnc-CCNJ-1:8
5.0 lnc-CCNJ-1:8
5.1 lnc-SMC3-205:20
5.2 lnc-CCNJ-1:8