Transcript: lnc-CCNJL-4:2

Basic information

LNCipedia transcript ID: lnc-CCNJL-4:2 
LNCipedia gene ID: lnc-CCNJL-4
Ensembl Gene ID: ENSG00000247699
Ensembl Transcript ID: ENST00000524005
Location (hg38): chr5:160195744-160199095
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 461 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524005.1; CTB-127C13.1-002; OTTHUMT00000374244.1; NONHSAT104838
Alternative gene names: ENSG00000247699.2; CTB-127C13.1; OTTHUMG00000163565.1; AC008609.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.2325 non-coding 
CPAT coding probability 4.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCNJL-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCNJL-1:2
4.0 lnc-CCNJL-4:2
4.1 lnc-CCNJL-4:2
5.0 lnc-CCNJL-4:2
5.1 lnc-FAM71B-33:2
5.2 lnc-CCNJL-4:2