Transcript: lnc-CCSAP-1:11

Basic information

LNCipedia transcript ID: lnc-CCSAP-1:11 
LNCipedia gene ID: lnc-CCSAP-1
Ensembl Gene ID: ENSG00000177788
Ensembl Transcript ID: ENST00000436334
Location (hg38): chr1:229269366-229271028
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 315 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000436334.1; RP5-1061H20.4-002; OTTHUMT00000091836.1; NONHSAT010074
Alternative gene names: ENSG00000177788.5; RP5-1061H20.4; OTTHUMG00000037660.1; AL162595.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.5658 non-coding 
CPAT coding probability 13.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSAP-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf96-1:1
4.0 lnc-C1orf96-1:1
4.1 lnc-C1orf96-1:1
5.0 lnc-C1orf96-1:1
5.1 lnc-TRIM17-26:11
5.2 lnc-CCSAP-1:11