Transcript: lnc-CCSAP-1:2

Basic information

LNCipedia transcript ID: lnc-CCSAP-1:2 
LNCipedia gene ID: lnc-CCSAP-1
Location (hg38): chr1:229261562-229271131
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 8221 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT010071
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.9543 non-coding 
CPAT coding probability 19.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSAP-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf96-1:4
4.0 lnc-C1orf96-1:4
4.1 lnc-C1orf96-1:4
5.0 lnc-C1orf96-1:4
5.1 lnc-TRIM17-26:2
5.2 lnc-CCSAP-1:2