Transcript: lnc-CCSAP-3:3

Basic information

LNCipedia transcript ID: lnc-CCSAP-3:3 
LNCipedia gene ID: lnc-CCSAP-3
Location (hg38): chr1:229183935-229184268
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 334 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236975.1|FTMT20200012664.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.0498 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSAP-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C1orf96-3:3
5.0 lnc-C1orf96-3:3
5.1 lnc-TRIM17-24:3
5.2 lnc-CCSAP-3:3