Transcript: lnc-CCSAP-3:5

Basic information

LNCipedia transcript ID: lnc-CCSAP-3:5 
LNCipedia gene ID: lnc-CCSAP-3
Location (hg38): chr1:229092815-229094906
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 600 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000236975.1|ENST00000433734.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -60.5991 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSAP-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C1orf96-3:6
5.0 lnc-C1orf96-3:6
5.1 lnc-TRIM17-24:5
5.2 lnc-CCSAP-3:5