Transcript: lnc-CCSAP-6:1

Basic information

LNCipedia transcript ID: lnc-CCSAP-6:1 
LNCipedia gene ID: lnc-CCSAP-6
Location (hg38): chr1:228891451-228897817
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 244 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001854; NONHSAT010063
Alternative gene names: XLOC_001242; linc-HIST3H2A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -207.375 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSAP-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP5-915N17.9.1-1:1
3.1 lnc-RP5-915N17.9.1-1:1
4.0 lnc-RP5-915N17.9.1-1:1
4.1 lnc-RP5-915N17.9.1-1:1
5.0 lnc-RP5-915N17.9.1-1:1
5.1 lnc-TRIM17-19:1
5.2 lnc-CCSAP-6:1