Transcript: lnc-CCSER1-1:2

Basic information

LNCipedia transcript ID: lnc-CCSER1-1:2 
LNCipedia gene ID: lnc-CCSER1-1
Ensembl Gene ID: ENSG00000249052
Ensembl Transcript ID: ENST00000505511
Location (hg38): chr4:91887886-91904335
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 577 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007573; ENST00000505511; ENST00000505511.1; RP11-354O24.1-001; OTTHUMT00000363498.2; NONHSAT097423
Alternative gene names: XLOC_003610; linc-GRID2; ENSG00000249052; RP11-354O24.1; ENSG00000249052.1; OTTHUMG00000161032.2; AC093810.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.9043 non-coding 
CPAT coding probability 6.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCSER1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM190A-1:1
3.1 lnc-FAM190A-1:1
4.0 lnc-FAM190A-1:1
4.1 lnc-FAM190A-1:1
5.0 lnc-FAM190A-1:1
5.1 lnc-CCSER1-1:1
5.2 lnc-CCSER1-1:2