Transcript: lnc-CCT8-1:1

Basic information

LNCipedia transcript ID: lnc-CCT8-1:1 
LNCipedia gene ID: lnc-CCT8-1
Ensembl Gene ID: ENSG00000224649
Ensembl Transcript ID: ENST00000430001
Location (hg38): chr21:29182027-29187795
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 327 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028911; ENST00000430001.1; AF124730.4-001; OTTHUMT00000171972.1; NONHSAT081627
Alternative gene names: XLOC_014047; linc-CCT8-1; ENSG00000224649.1; AF124730.4; OTTHUMG00000078877.1; AF124730.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -190.0316 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCT8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCT8-1:1
3.1 lnc-CCT8-1:1
4.0 lnc-CCT8-1:1
4.1 lnc-CCT8-1:1
5.0 lnc-CCT8-1:1
5.1 lnc-LTN1-11:1
5.2 lnc-CCT8-1:1