Transcript: lnc-CCT8L2-1:2

Basic information

LNCipedia transcript ID: lnc-CCT8L2-1:2 
LNCipedia gene ID: lnc-CCT8L2-1
Location (hg38): chr22:16673561-16679484
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1496 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000338526.6; ANKRD62P1-201
Alternative gene names: ENSG00000189295.8; ANKRD62P1; OTTHUMG00000172533.1; ENSG00000189295.9; ANKRD62P1-PARP4P3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.0308 non-coding 
CPAT coding probability 99.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCT8L2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCT8L2-1:2
4.0 lnc-CCT8L2-1:2
4.1 lnc-CCT8L2-1:2
5.0 lnc-CCT8L2-1:2
5.1 lnc-RTN4R-80:2
5.2 lnc-CCT8L2-1:2