Transcript: lnc-CCT8L2-1:3

Basic information

LNCipedia transcript ID: lnc-CCT8L2-1:3 
LNCipedia gene ID: lnc-CCT8L2-1
Ensembl Gene ID: ENSG00000189295
Ensembl Transcript ID: ENST00000456726
Location (hg38): chr22:16654066-16675540
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1181 bp
Exons: 9
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000456726.1; ANKRD62P1-001; OTTHUMT00000418974.1; ENST00000456726.5
Alternative gene names: ENSG00000189295.8; ANKRD62P1; OTTHUMG00000172533.1; ENSG00000189295.9; ANKRD62P1-PARP4P3; ENSG00000189295.13


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.3348 non-coding 
CPAT coding probability 52.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCT8L2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCT8L2-1:3
4.0 lnc-CCT8L2-1:3
4.1 lnc-CCT8L2-1:3
5.0 lnc-CCT8L2-1:3
5.1 lnc-RTN4R-80:3
5.2 lnc-CCT8L2-1:3