Transcript: lnc-CCT8L2-6:1

Basic information

LNCipedia transcript ID: lnc-CCT8L2-6:1 
LNCipedia gene ID: lnc-CCT8L2-6
Ensembl Gene ID: ENSG00000233408
Ensembl Transcript ID: ENST00000444162
Location (hg38): chr22:15557577-15560694
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1294 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444162.1; LA16c-23H5.4-004; OTTHUMT00000074929.2; NONHSAT083112
Alternative gene names: ENSG00000233408.1; LA16c-23H5.4; OTTHUMG00000030075.2; AP000534.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.3733 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CCT8L2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL17RA-6:1
4.0 lnc-IL17RA-6:1
4.1 lnc-IL17RA-6:1
5.0 lnc-IL17RA-6:1
5.1 lnc-RTN4R-90:1
5.2 lnc-CCT8L2-6:1