Transcript: lnc-CCT8L2-7:2

Basic information

LNCipedia transcript ID: lnc-CCT8L2-7:2 
LNCipedia gene ID: lnc-CCT8L2-7
Ensembl Gene ID: ENSG00000230471
Ensembl Transcript ID: ENST00000428118
Location (hg38): chr22:15600908-15604882
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1730 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428118; ENST00000428118.1; LA16c-2F2.8-001; OTTHUMT00000277001.1
Alternative gene names: ENSG00000230471; LA16c-2F2.8; ENSG00000230471.1; OTTHUMG00000140353.1; AP000532.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 54.8951 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CCT8L2-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL17RA-6:2
3.1 lnc-IL17RA-7:1
4.0 lnc-IL17RA-7:1
4.1 lnc-IL17RA-7:1
5.0 lnc-IL17RA-7:1
5.1 lnc-RTN4R-88:2
5.2 lnc-CCT8L2-7:2