Transcript: lnc-CD101-3:1

Basic information

LNCipedia transcript ID: lnc-CD101-3:1 
LNCipedia gene ID: lnc-CD101-3
Location (hg38): chr1:117104547-117104882
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 264 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002142; NONHSAT005472
Alternative gene names: XLOC_000363; linc-MAN1A2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.3316 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD101-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTF2-1:1
3.1 lnc-TTF2-1:1
4.0 lnc-TTF2-1:1
4.1 lnc-TTF2-1:1
5.0 lnc-TTF2-1:1
5.1 lnc-WDR3-12:1
5.2 lnc-CD101-3:1