Transcript: lnc-CD177-1:1

Basic information

LNCipedia transcript ID: lnc-CD177-1:1 
LNCipedia gene ID: lnc-CD177-1
Ensembl Gene ID: ENSG00000227606
Ensembl Transcript ID: ENST00000419624
Location (hg38): chr19:43153279-43160862
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419624.1; AC005392.13-001; OTTHUMT00000323071.1; NONHSAT066583
Alternative gene names: ENSG00000227606.1; AC005392.13; OTTHUMG00000151543.1; ENSG00000227606.2; AC005392.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.112 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD177-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD177-1:1
4.0 lnc-CD177-1:1
4.1 lnc-CD177-1:1
5.0 lnc-CD177-1:1
5.1 lnc-ZNF222-42:1
5.2 lnc-CD177-1:1