Transcript: lnc-CD177-1:2

Basic information

LNCipedia transcript ID: lnc-CD177-1:2 
LNCipedia gene ID: lnc-CD177-1
Location (hg38): chr19:43153513-43155159
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000425982.1; AC005392.13-002; OTTHUMT00000323072.1; NONHSAT066584
Alternative gene names: ENSG00000227606.1; AC005392.13; OTTHUMG00000151543.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.5549 non-coding 
CPAT coding probability 4.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD177-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD177-1:2
4.0 lnc-CD177-1:2
4.1 lnc-CD177-1:2
5.0 lnc-CD177-1:2
5.1 lnc-ZNF222-42:2
5.2 lnc-CD177-1:2