Transcript: lnc-CD180-6:1

Basic information

LNCipedia transcript ID: lnc-CD180-6:1 
LNCipedia gene ID: lnc-CD180-6
Ensembl Gene ID: ENSG00000249894
Ensembl Transcript ID: ENST00000514791
Location (hg38): chr5:67800740-67890096
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514791; ENST00000514791.1; RP11-434D9.2-001; OTTHUMT00000368622.1
Alternative gene names: ENSG00000249894; RP11-434D9.2; ENSG00000249894.1; OTTHUMG00000162354.1; AC024581.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.9261 non-coding 
CPAT coding probability 28.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD180-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD180-5:1
3.1 lnc-CD180-6:1
4.0 lnc-CD180-6:1
4.1 lnc-CD180-6:1
5.0 lnc-CD180-6:1
5.1 lnc-TRIM23-27:1
5.2 lnc-CD180-6:1