Transcript: lnc-CD1B-1:1

Basic information

LNCipedia transcript ID: lnc-CD1B-1:1 
LNCipedia gene ID: lnc-CD1B-1
Ensembl Gene ID: ENSG00000176320
Ensembl Transcript ID: ENST00000415019
Location (hg38): chr1:158197922-158203877
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1999 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415019; ENST00000415019.1; RP11-404O13.5-001; OTTHUMT00000058352.1; NONHSAT006975
Alternative gene names: ENSG00000176320; RP11-404O13.5; ENSG00000176320.2; OTTHUMG00000022444.1; AL138899.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.7098 non-coding 
CPAT coding probability 22.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD1B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD1B-1:1
3.1 lnc-CD1B-1:1
4.0 lnc-CD1B-1:1
4.1 lnc-CD1B-1:1
5.0 lnc-CD1B-1:1
5.1 lnc-TAGLN2-20:1
5.2 lnc-CD1B-1:1