Transcript: lnc-CD300C-1:1

Basic information

LNCipedia transcript ID: lnc-CD300C-1:1 
LNCipedia gene ID: lnc-CD300C-1
Location (hg38): chr17:74534675-74537921
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 245 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026160; NONHSAT055793
Alternative gene names: XLOC_012574; linc-CD300LB


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.8389 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD300C-1:1 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD300C-1:1
3.1 lnc-CD300C-1:1
4.0 lnc-CD300C-1:1
4.1 lnc-CD300C-1:1
5.0 lnc-CD300C-1:1
5.1 lnc-GRB2-30:1
5.2 lnc-CD300C-1:1