Transcript: lnc-CD34-22:2

Basic information

LNCipedia transcript ID: lnc-CD34-22:2 
LNCipedia gene ID: lnc-CD34-22
Ensembl Gene ID: ENSG00000236911
Ensembl Transcript ID: ENST00000596003
Location (hg38): chr1:207569836-207606555
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 592 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT009134; ENST00000596003.1; ENST00000596003.4
Alternative gene names: ENSG00000236911.2; RP11-78B10.2; ENSG00000236911.6; AL137789.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.5487 non-coding 
CPAT coding probability 1.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD34-22:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf132-3:2
4.0 lnc-C1orf132-3:2
4.1 lnc-C1orf132-3:2
5.0 lnc-C1orf132-3:2
5.1 lnc-CD34-9:2
5.2 lnc-CD34-22:2