Transcript: lnc-CD36-11:3

Basic information

LNCipedia transcript ID: lnc-CD36-11:3 
LNCipedia gene ID: lnc-CD36-11
Ensembl Gene ID: ENSG00000223770
Ensembl Transcript ID: ENST00000454066
Location (hg38): chr7:82009192-82028343
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 940 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454066.1; MIR1255B1-002; OTTHUMT00000337034.1; NONHSAT121770
Alternative gene names: ENSG00000223770.1; MIR1255B1; OTTHUMG00000154779.1; ENSG00000223770.5; AC006145.4; AC006145.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.273 non-coding 
CPAT coding probability 11.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD36-11:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC005008.2.1-1:2
4.0 lnc-AC005008.2.1-1:2
4.1 lnc-AC005008.2.1-1:2
5.0 lnc-AC005008.2.1-1:2
5.1 lnc-FKBP6-140:3
5.2 lnc-CD36-11:3