Transcript: lnc-CD36-12:2

Basic information

LNCipedia transcript ID: lnc-CD36-12:2 
LNCipedia gene ID: lnc-CD36-12
Ensembl Gene ID: ENSG00000235503
Ensembl Transcript ID: ENST00000430696
Location (hg38): chr7:83355154-83362266
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 331 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013032; ENST00000430696.2; AC079799.2-001; OTTHUMT00000336549.2; NONHSAT121782
Alternative gene names: XLOC_006158; linc-GRM3-3; ENSG00000235503.2; AC079799.2; OTTHUMG00000154683.2; AC079799.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5753 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD36-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC005008.2.1-1:1
3.1 lnc-AC005008.2.1-2:1
4.0 lnc-AC005008.2.1-2:1
4.1 lnc-AC005008.2.1-2:1
5.0 lnc-AC005008.2.1-2:1
5.1 lnc-FKBP6-132:2
5.2 lnc-CD36-12:2