Transcript: lnc-CD46-2:1

Basic information

LNCipedia transcript ID: lnc-CD46-2:1 
LNCipedia gene ID: lnc-CD46-2
Location (hg38): chr1:207963651-207965920
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1708 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001255; NONHSAT009160
Alternative gene names: XLOC_000543; linc-LOC642587-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.4314 non-coding 
CPAT coding probability 6.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD46-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD46-2:1
3.1 lnc-CD46-2:1
4.0 lnc-CD46-2:1
4.1 lnc-CD46-2:1
5.0 lnc-CD46-2:1
5.1 lnc-SERTAD4-26:3
5.2 lnc-CD46-2:1