Transcript: lnc-CD5-1:1

Basic information

LNCipedia transcript ID: lnc-CD5-1:1 
LNCipedia gene ID: lnc-CD5-1
Ensembl Gene ID: ENSG00000256733
Ensembl Transcript ID: ENST00000536495
Location (hg38): chr11:61055737-61067535
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536495; ENST00000536495.1; RP11-881M11.8-001; OTTHUMT00000396464.1; NONHSAT021623
Alternative gene names: ENSG00000256733; RP11-881M11.8; ENSG00000256733.1; OTTHUMG00000167824.1; AP003721.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.5188 non-coding 
CPAT coding probability 8.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD5-1:1
3.1 lnc-CD5-1:1
4.0 lnc-CD5-1:1
4.1 lnc-CD5-1:1
5.0 lnc-CD5-1:1
5.1 lnc-MS4A18-10:1
5.2 lnc-CD5-1:1