Transcript: lnc-CD58-1:4

Basic information

LNCipedia transcript ID: lnc-CD58-1:4 
LNCipedia gene ID: lnc-CD58-1
Location (hg38): chr1:116374133-116374661
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 477 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000432281.1; RP4-655J12.3-001; OTTHUMT00000033489.1; NONHSAT005421
Alternative gene names: ENSG00000229895.1; RP4-655J12.3; OTTHUMG00000012113.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.2796 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD58-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP1A1OS-1:1
4.0 lnc-ATP1A1OS-1:1
4.1 lnc-ATP1A1OS-1:1
5.0 lnc-ATP1A1OS-1:1
5.1 lnc-CD58-1:3
5.2 lnc-CD58-1:4