Transcript: lnc-CD58-2:1

Basic information

LNCipedia transcript ID: lnc-CD58-2:1 
LNCipedia gene ID: lnc-CD58-2
Location (hg38): chr1:116429051-116563167
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 513 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000439755.1; RP4-655J12.5-001; OTTHUMT00000051442.1; NONHSAT005437
Alternative gene names: ENSG00000230381.1; RP4-655J12.5; OTTHUMG00000014036.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.8821 non-coding 
CPAT coding probability 0.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD58-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD58-2:1
4.0 lnc-CD58-2:1
4.1 lnc-CD58-2:1
5.0 lnc-CD58-2:1
5.1 lnc-CD58-2:1
5.2 lnc-CD58-2:1