Transcript: lnc-CD58-2:3

Basic information

LNCipedia transcript ID: lnc-CD58-2:3 
LNCipedia gene ID: lnc-CD58-2
Ensembl Gene ID: ENSG00000230381
Ensembl Transcript ID: ENST00000449303
Location (hg38): chr1:116429049-116433368
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 515 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT005436; ENST00000449303.2
Alternative gene names: ENSG00000230381.2; RP4-655J12.5; AL136376.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.6059 non-coding 
CPAT coding probability 4.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CD58-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CD58-2:3
4.0 lnc-CD58-2:3
4.1 lnc-CD58-2:3
5.0 lnc-CD58-2:3
5.1 lnc-CD58-2:3
5.2 lnc-CD58-2:3