Transcript: lnc-CDC27-2:3

Basic information

LNCipedia transcript ID: lnc-CDC27-2:3 
LNCipedia gene ID: lnc-CDC27-2
Location (hg38): chr17:47323198-47325001
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1686 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000501005; NONHSAT054298
Alternative gene names: ENSG00000247683; AC068234.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.5551 non-coding 
CPAT coding probability 16.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC27-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC040934.1-1:1
3.1 lnc-AC040934.1-2:1
4.0 lnc-CDC27-2:3
4.1 lnc-CDC27-2:3
5.0 lnc-CDC27-2:3
5.1 lnc-ZNF652-52:2
5.2 lnc-CDC27-2:3