Transcript: lnc-CDC27-2:9

Basic information

LNCipedia transcript ID: lnc-CDC27-2:9 
LNCipedia gene ID: lnc-CDC27-2
Location (hg38): chr17:47303466-47305685
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 481 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000576345.1; RP11-290H9.4-002; OTTHUMT00000441069.1
Alternative gene names: ENSG00000263293.1; RP11-290H9.4; OTTHUMG00000178233.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -458.8474 non-coding 
CPAT coding probability 2.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC27-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC040934.1-2:3
4.0 lnc-CDC27-2:9
4.1 lnc-CDC27-2:9
5.0 lnc-CDC27-2:9
5.1 lnc-ZNF652-52:16
5.2 lnc-CDC27-2:9