Transcript: lnc-CDC27-8:1

Basic information

LNCipedia transcript ID: lnc-CDC27-8:1 
LNCipedia gene ID: lnc-CDC27-8
Ensembl Gene ID: ENSG00000253347
Ensembl Transcript ID: ENST00000523101
Location (hg38): chr17:47409322-47423526
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 513 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523101.1; CTD-2026D20.2-001; OTTHUMT00000380157.1; NONHSAT054303
Alternative gene names: ENSG00000253347.1; CTD-2026D20.2; OTTHUMG00000164768.1; AC040934.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.5952 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC27-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC040934.1-1:1
4.0 lnc-AC040934.1-1:1
4.1 lnc-AC040934.1-1:1
5.0 lnc-AC040934.1-1:1
5.1 lnc-ZNF652-51:1
5.2 lnc-CDC27-8:1