Transcript: lnc-CDC42BPA-6:1

Basic information

LNCipedia transcript ID: lnc-CDC42BPA-6:1 
LNCipedia gene ID: lnc-CDC42BPA-6
Location (hg38): chr1:226937801-226939984
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2184 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000096657.1|ENCT00000038732.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.3895 non-coding 
CPAT coding probability 6.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC42BPA-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CDC42BPA-6:1
5.0 lnc-CDC42BPA-6:1
5.1 lnc-PARP1-12:1
5.2 lnc-CDC42BPA-6:1