Transcript: lnc-CDC42BPB-1:3

Basic information

LNCipedia transcript ID: lnc-CDC42BPB-1:3 
LNCipedia gene ID: lnc-CDC42BPB-1
Ensembl Gene ID: ENSG00000259508
Ensembl Transcript ID: ENST00000559402
Location (hg38): chr14:102771135-102774765
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559402.1; RP11-661D19.3-002; OTTHUMT00000415869.1; NONHSAT040120
Alternative gene names: ENSG00000259508.1; RP11-661D19.3; OTTHUMG00000171914.1; AL132801.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.6187 non-coding 
CPAT coding probability 20.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC42BPB-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDC42BPB-1:3
4.0 lnc-CDC42BPB-1:3
4.1 lnc-CDC42BPB-1:3
5.0 lnc-CDC42BPB-1:3
5.1 lnc-CDC42BPB-1:3
5.2 lnc-CDC42BPB-1:3