Transcript: lnc-CDC42EP1-1:1

Basic information

LNCipedia transcript ID: lnc-CDC42EP1-1:1 
LNCipedia gene ID: lnc-CDC42EP1-1
Ensembl Gene ID: ENSG00000225867
Ensembl Transcript ID: ENST00000428838
Location (hg38): chr22:37550026-37551735
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029423; ENST00000428838.1; RP5-1177I5.3-001; OTTHUMT00000319009.1; NONHSAT086607
Alternative gene names: XLOC_014235; linc-CDC42EP1-1; ENSG00000225867.1; RP5-1177I5.3; OTTHUMG00000150593.1; AL022315.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.4943 non-coding 
CPAT coding probability 9.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC42EP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDC42EP1-1:1
3.1 lnc-CDC42EP1-1:1
4.0 lnc-CDC42EP1-1:1
4.1 lnc-CDC42EP1-1:1
5.0 lnc-CDC42EP1-1:1
5.1 lnc-APOBEC3H-68:2
5.2 lnc-CDC42EP1-1:1