Transcript: lnc-CDC73-2:1

Basic information

LNCipedia transcript ID: lnc-CDC73-2:1 
LNCipedia gene ID: lnc-CDC73-2
Location (hg38): chr1:193678894-193727183
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000362; ENST00000448412; ENST00000448412.1; RP11-21J7.1-001; OTTHUMT00000086762.1; NONHSAT008572
Alternative gene names: XLOC_000509; linc-CFH-3; ENSG00000226640; RP11-21J7.1; ENSG00000226640.1; OTTHUMG00000035690.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.473 non-coding 
CPAT coding probability 22.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC73-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDC73-2:1
3.1 lnc-CDC73-2:1
4.0 lnc-CDC73-2:1
4.1 lnc-CDC73-2:1
5.0 lnc-CDC73-2:1
5.1 lnc-CFHR3-42:1
5.2 lnc-CDC73-2:1