Transcript: lnc-CDC73-3:1

Basic information

LNCipedia transcript ID: lnc-CDC73-3:1 
LNCipedia gene ID: lnc-CDC73-3
Ensembl Gene ID: ENSG00000227240
Ensembl Transcript ID: ENST00000454538
Location (hg38): chr1:194149473-194198694
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 832 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454538.1; RP11-563D10.1-001; OTTHUMT00000086329.1; NONHSAT008579
Alternative gene names: ENSG00000227240.1; RP11-563D10.1; OTTHUMG00000035564.1; AL356272.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.7169 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC73-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDC73-3:1
4.0 lnc-CDC73-3:1
4.1 lnc-CDC73-3:1
5.0 lnc-CDC73-3:1
5.1 lnc-CFHR3-35:1
5.2 lnc-CDC73-3:1