Transcript: lnc-CDC73-4:1

Basic information

LNCipedia transcript ID: lnc-CDC73-4:1 
LNCipedia gene ID: lnc-CDC73-4
Ensembl Gene ID: ENSG00000231714
Ensembl Transcript ID: ENST00000435554
Location (hg38): chr1:194350943-194352426
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000363; ENST00000435554; ENST00000435554.1; RP11-476H20.1-001; OTTHUMT00000086407.1; NONHSAT008582
Alternative gene names: XLOC_000510; linc-CFH-2; ENSG00000231714; RP11-476H20.1; ENSG00000231714.1; OTTHUMG00000035603.1; AL513348.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -341.4506 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDC73-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDC73-3:1
3.1 lnc-CDC73-4:1
4.0 lnc-CDC73-4:1
4.1 lnc-CDC73-4:1
5.0 lnc-CDC73-4:1
5.1 lnc-CFHR3-32:2
5.2 lnc-CDC73-4:1