Transcript: lnc-CDH1-1:2

Basic information

LNCipedia transcript ID: lnc-CDH1-1:2 
LNCipedia gene ID: lnc-CDH1-1
Location (hg38): chr16:68936948-68937493
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 546 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_chen_BX112083_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -275.5736 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CDH1-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDH1-1:2
4.0 lnc-CDH1-1:2
4.1 lnc-CDH1-1:2
5.0 lnc-CDH1-1:2
5.1 lnc-PRMT7-20:2
5.2 lnc-CDH1-1:2